Menu
MolecularBio geeks: What's the best sequence analysis software for OS X?
I need to do quite straightforward stuff: Fetch sequences from GenBank (and eventually from my lab's sequencer), run alignments and phylogenies. Nothing too fancy. I am playing around with MacGDE -- any other suggestions? Thanks!posted by docgonzo to Science & Nature (7 answers total)
![Best molecular biology software mac download Best molecular biology software mac download](/uploads/1/3/3/2/133273167/632087574.jpg)
- Molecular Biology Techniques
- Molecular Biology Software Mac
- Molecular Biology Examples
- Free Biology Software
- Best Molecular Biology Software Macbook Pro
OTHER SITES FOR MAC SOFTWARE DOWNLOAD. Molecular Biology and Scientific Software. Online software tools and databases for Molecular Biology (@Weizmann). Art's Free Software Page (List of free software that is relevant to the Molecular Biology and Structural Biology fields. For different platforms: mac-windows-unix). In my lab, we want a software package to facilitate the link between bioinformatic and molecular biology. So a soft which permits to view and edit sequences, the annotation, restriction sites, primer design, alignment. So a program that covers a lot of the work of molecular biologists.
I need to do quite straightforward stuff: Fetch sequences from GenBank (and eventually from my lab's sequencer), run alignments and phylogenies. Nothing too fancy. I am playing around with MacGDE -- any other suggestions? Thanks!
DNAStar is OK -- maybe newer versions are better. It's pretty simple to use, if not overly powerful. Maybe there's a free demo you could try out.
posted by sennoma at 9:37 AM on May 24, 2005
posted by sennoma at 9:37 AM on May 24, 2005
Molecular Biology Techniques
Do you need a GUI? All of the commercial apps can be supplanted with open-source or free command-line equivalents, or you can run stuff on the web.
MacVector is excellent and runs under OS X natively.
VectorNTI is comprehensive but does not run under Tiger. The developer has no plans to update this product to run under Tiger.
posted by AlexReynolds at 10:04 AM on May 24, 2005
MacVector is excellent and runs under OS X natively.
VectorNTI is comprehensive but does not run under Tiger. The developer has no plans to update this product to run under Tiger.
posted by AlexReynolds at 10:04 AM on May 24, 2005
Have you explored the tools available online? The NCBI website has a whole bunch of stuff and it's pretty easy to navigate. They have BLAST, of course. There are other sites for more esoteric stuff, but they are not quite as easy to use as NCBI. There's SRS which has a lot of tools, and the ClustalW tool for multiple alignments. You could also browse around the Expasy PROSITE and Pfam sites for other potentially useful tools and links (these 2 are for proteins, but you can translate DNA sequences into protein sequences using some of the BLAST tools at NCBI). Most sites will let you upload your own sequence in Fasta format, even though they are geared toward analyzing stuff that's already in various databases. There's some amazingly powerful tools available for free on the web, so you might not need to buy anything. Oh, and these work in Safari - that's what I use. I don't know about other browsers.
posted by Quietgal at 10:12 AM on May 24, 2005
posted by Quietgal at 10:12 AM on May 24, 2005
I have usually been disappointed by alignments and phylogenies generated by commercial off-the-shelf software. They try to simplify stuff a little too much, in my experience. Fetching and displaying sequences should be pretty straightforward.
I would recommend trying the free and well-respected EMBOSS and its varoius front-ends, some of which are just for Mac OS X.
posted by grouse at 10:17 AM on May 24, 2005
I would recommend trying the free and well-respected EMBOSS and its varoius front-ends, some of which are just for Mac OS X.
posted by grouse at 10:17 AM on May 24, 2005
Get Virtual PC and run BioEdit. I'm not kidding.
posted by gsb at 11:34 AM on May 24, 2005
posted by gsb at 11:34 AM on May 24, 2005
Side note from a non-bio type -- phylogeny generators; how accurate and automated can they get? Are there any good free ones I can try?
posted by effugas at 2:47 PM on May 24, 2005
posted by effugas at 2:47 PM on May 24, 2005
Phylogeny of what?
Accuracy: How do you want to determine how accurate the phylogeny is?
Automated: The more default parameters you use, the poorer your results will be.
PAML and Phylip are widely used. I have been told that little effort has gone into making PAML easy to use because doing so will only encourage people who don't know what they're doing to report spurious results.
Abandon all hope ye who enter here.
posted by grouse at 3:15 PM on May 24, 2005
Accuracy: How do you want to determine how accurate the phylogeny is?
Automated: The more default parameters you use, the poorer your results will be.
PAML and Phylip are widely used. I have been told that little effort has gone into making PAML easy to use because doing so will only encourage people who don't know what they're doing to report spurious results.
Abandon all hope ye who enter here.
posted by grouse at 3:15 PM on May 24, 2005
« Older Recovering lost movies | Book Title Filter Newer »
This thread is closed to new comments.
![Best molecular biology software mac download Best molecular biology software mac download](/uploads/1/3/3/2/133273167/632087574.jpg)
OSX hacks, tweaks and cleaners.October 25, 2012
Once you see my sweet moves you're gonna stay.May 20, 2010
Best Free Programs for a Mac?November 16, 2006
Statistical analysis package for OS X needed.March 17, 2006
Apple Memory UpgradesDecember 6, 2004
Once you see my sweet moves you're gonna stay.May 20, 2010
Best Free Programs for a Mac?November 16, 2006
Statistical analysis package for OS X needed.March 17, 2006
Apple Memory UpgradesDecember 6, 2004
The representation of typical chemical structures can be never easy. A perfect application is required to represent all the chemical structures whether you are doing a scientific research or creating a chemistry project. You can find countless chemical drawing software online but it sometimes seems difficult to find the best one as per your project requirements. To help you with this, today we have brought a list of top chemical drawing software that you can try and make your chemical drawing work much easier.
Related:
Chemical Structures in 3D
Jmol is one of the best chemical structure drawing software that is based on open-source java viewer. Hp scan software mac osx. Jmol is an interactive and powerful web browser applet with featured for crystals, chemicals, biomolecules, and materials. This software can conveniently run on Windows, Mac OS X, and Linux/Unix systems. Get this software downloaded online.
Advanced Chemical Drawing Software
Go for MarvinSketch, an advanced chemical drawing software ideal for students, educators, scientists, researchers and more. https://sitedog597.weebly.com/virtual-dj-9-free-download-full-version-for-windows-10.html. It allows you to quickly draw molecules through various advanced options and functions available on GUI. You can easily create reaction drawings as well as query drawing with this software. Get this software downloaded instantly online. Webkit in macos app.
SimChemistry
Simchemistry is another option available to you if you are looking for a strong and powerful chemical drawing software for your study or research related chemistry projects. This program has 2D molecule dynamic algorithm included and thus can help you draw your chemical shapes and structures easily using your windows PC. Represent the behavior or chemical elements effectively using this software.
Other Chemical Drawing Software for Different Platforms
Among various chemical drawing software available online you can also find platform specific software that are developed specifically for particular platforms like windows, Mac, Android and more. These platform specific software can offer you better performance and chemical drawing facilities due to effective functions and options. So let’s have a look on best chemical structure drawing software available for different platforms.
Best Chemical Drawing Software for Mac – ChemBioDraw
Molecular Biology Software Mac
ChemBioDraw is the first choice pf biologists and chemists as a chemical drawing software in order to create scientifically intelligent drawings. Togainu no chi mac download. This drawing software has been developed for Mac systems and brings great ease, quality of structures and rich set of chemical tools to create outstanding chemical designs. Get downloaded now.
Best Chemical Drawing Software for Windows – Chemistry Software
Chemistry software is a free chemical drawing software offered by ACD/Labs especially for personal, home as well as educational use. This software is ideal to help you create outstanding and even typical chemical drawings representing properties exhibited by various chemical compounds and elements. So create a professional chemical design with this powerful windows chemical drawing software available online.
Best Chemical Drawing Software for Android – ChemDoodle
ChemDoodle is one of the best application for android devices that helps you create professional, high quality and intelligent chemical drawings in 3D. You can draw molecules in 3D and thus represent their behavior clearly. Bookkeeping software for mac. This application also lets you calculate drawn organic structures. Get this ChemDoodle application downloaded online now.
Most Popular Chemical Structure Software – BIOVIA Draw
BIOVIA Draw is one of the most popular chemical structure software that helps you draw and edit chemical reactions, complex molecules, and more chemical structures. It can manage complex biological entities like register and retrieve peptides, oligosaccharides, and oligonucleotides. Its documented API enables you to create custom add-ins and drop them as tools, menus, buttons and more. You can also see Injection Molding Software
Molecular Biology Examples
How to Install Chemical Drawing Software?
Whenever you need to represent the internal structure of a molecule and chemical reactions, you might need to download chemical drawing software. So find a suitable chemical drawing software, free download online and get downloaded instantly. Upon download, open the setup of the downloaded software. Agree to the various terms and conditions of usage of the software. Choose the space or drive on your PC and start the installation process. It will take a few minutes for installation and you can start using this software as soon as after installation. You can also see Brewery Management Software
Free Biology Software
Chemical drawing software gives you an easy, quick and convenient way to create chemical structures and drawings. So get any of the above-listed chemical drawing software downloaded online and ring ease to your overall task. Whether you are a student, educator, teacher, scientist or researcher, these software can help you greatly with all kinds of your chemical projects.